PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 308aa    MW: 34123.4 Da    PI: 9.9551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+  l  +v ++G+g W+tI +          R+  ++k++w++ 
   XP_016461160.1  5 KLKWTPEEEVALRAGVIKYGPGKWRTILKDPEfsgvlYLRSNVDLKDKWRNM 56
                     689**********************************88***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.648161IPR017930Myb domain
SuperFamilySSF466893.28E-15271IPR009057Homeodomain-like
SMARTSM007172.4E-6459IPR001005SANT/Myb domain
PfamPF002499.1E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-13556IPR009057Homeodomain-like
CDDcd116608.83E-18757No hitNo description
SMARTSM005266.2E-11118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.78E-14119196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.162120188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.5E-13123189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.3E-6125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGAPKLKWTP EEEVALRAGV IKYGPGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMTVMA  60
NGWGSREKAK LALKRMIQAP MQDESSVAVT SAAECDAEIP EARPATTSRG SPQLGGSRRS  120
ILRLDNLIME TISNLNEPGG SYQATISTYI EDQYWETPNF KRILLAKLKY LTATGKLIKM  180
KRKYKVAPKL TFSNRRRNLP LPLLDSSQRI CSKVDQDDIN MLTRSQIDLD LEKMRNMSPQ  240
EAAAAAAQAV AEADTAIADA AEAARKAEAA AAEAEAAQAF AEAAMKTLQE RSIPRMLVNM  300
VKKFVGME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461160.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
SwissprotQ8VWK41e-90TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1C4E11e-130M1C4E1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000595421e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-87telomere repeat binding factor 1